notebook · javid's homepage · est. 2026
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From brain imagingto sports simulation.

I’m Javid, an AI/ML researcher at Penn Medicine and the founder of Scoutics. I develop methods for brain image analysis and am building simulation-based tools for sports intelligence.

My work began in information retrieval, continued through a PhD in computer science at Yale, and moved into fetal MRI at MGH and brain imaging and histology at Penn. Across these projects, I work on extracting useful information from data that can be limited, noisy, or difficult to compare.

based in: Philadelphia
links: Academic CV (earlier version), Scholar, GitHub
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the path so far
2012 / 2015
University of Tehran
Bachelor’s and master’s degrees · early research in information retrieval
2017–2023
Yale University
PhD in Computer Science · with Dustin Scheinost and Amin Karbasi
2023–2024
Massachusetts General Hospital / Harvard Medical School
Research Fellow · July 2023–October 2024
2024–present
University of Pennsylvania
Postdoctoral Researcher · with Ragini Verma · since November 2024
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questions behind the work

earlier work · information retrieval

Finding information across languages

My early research studied how to translate search queries when a dictionary offers several possible meanings. I developed an expectation-maximization approach that uses retrieved documents to estimate which translations are useful for a query.

Yale · connectomics

Comparing brain networks across atlases

Brain datasets often use different atlases to define regions, making their connectivity measurements difficult to compare. During my PhD, I developed optimal-transport methods for this problem, including CAROT, which estimates connectomes in a target atlas without requiring the original raw scans.

MGH / Harvard · fetal MRI

Locating and segmenting the fetal brain

At MGH, I worked on fetal brain segmentation and extraction from MRI. The method combines models trained with synthetic images and a staged search that first locates the brain, then refines its mask. It addresses limited labeled data and variation in fetal size and position.

Penn · porcine MRI

Extracting the brain in animal imaging

At Penn, I developed PIGSKIN with collaborators to separate brain tissue from surrounding structures in pig MRI. The method uses synthetic training images derived from a small set of annotated scans, adapting brain-extraction tools to porcine anatomy.

Penn · histology

Measuring sparse axonal pathology

With PIGMENT, I am developing a deep-learning framework to segment APP-positive axonal pathology in porcine tissue sections. The work focuses on small, fragmented targets and on measuring pathology beyond pixel overlap alone.

Ongoing research · SegFormer · morphology-aware augmentation
Penn · multimodal imaging

Connecting tissue sections with MRI

I also contribute to workflows for aligning histology with MRI. The goal is to place microscopic tissue measurements in anatomical context and study their relationship to MRI measures of brain injury, including diffusion imaging.

Ongoing research · histology–MRI registration
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building Scoutics

Alongside my research, I’m building Scoutics: a simulation-driven approach to sports intelligence. The project brings sports data, predictive modeling, and match simulation into one workspace.

The direction is to move beyond a single prediction: let people explore how a game might unfold, change assumptions about lineups or tactics, and examine the range of possible outcomes. Soccer is the starting point for this work, with fantasy football as another application of the underlying models.

Explore Scoutics →

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selected papers

More publications and collaborators →

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recognition & invention

2022
Co-author of the Best Paper at the GRAIL workshop, held with MICCAI, for our graph-matching work on connectome remapping.